Hello, still a newbie to Gen3 and with a rather obvious question - why is it that when you are setting up a program, you have to use a dbgap id? Must the data already be deposited in dbGap for a successful Gen3 setup?
thanks for your assistance.
Hello, still a newbie to Gen3 and with a rather obvious question - why is it that when you are setting up a program, you have to use a dbgap id? Must the data already be deposited in dbGap for a successful Gen3 setup?
thanks for your assistance.
Hi @Lavinia!
No, there is no such requirement.
Our developers mentioned that dbgap_accession_number
is hardcoded in a few places so developers do not advice to rename this field it in the dictionary. You can use any value for this field for your datasets.
@Lavinia, I wonder if you are interested in our gen3_community slack channel, where people share their experience in setting up Gen3?
Thanks Viktorija, I appreciate the fast response!
Hmm, I am having trouble setting up a program and project. I get a success message when setting up a project, but when I got to "submit", I cannot see my project listed under "List of Projects". I'll have another read through the documents and see if I have missed anything. Should I get a green success message when setting up a program?
Hi Viktorija,
Sorry, also meant to say that I am interested in the Slack channel thanks!
with regards,
Lavinia.
Maybe some permissions are missing in the user.yaml file for your new program and project? Here is a link for latest user.yaml Guide https://github.com/uc-cdis/fence/blob/master/docs/user.yaml_guide.md
Great! We will send you an invite!
The invite to gen3_community slack sent